Noteable High-Level Design Description
First, we have to declare that the term 'notebook' is often over-used, so let’s break this down into four parts:
- The 'notebook document' is the file, in
ipynbformat, that contains the source code & output of your work.
- There’s the backend bit that takes the source code and compiles it. This is language-specific, and is called the 'kernel'.
- There’s the front-end 'notebook dashboard', which is mainly used to open notebook documents and manage files.
- Finally, the 'notebook app' is the term for the application that provides the web-server which powers all this.
Let’s start with 3rd generation programming languages (3GL) - machine independent, abstracted, programmer-centric. The source code is written, then compiled into another form, which is then executed.
3GL programmers often use an integrated development environment (IDE) tool to write, compile, and execute code all from the same place. IDEs often come with additional helpful features such as syntax highlighting, code-completion, and debugging. 3GL programming means a developer can use an IDE on their workstation, with locally installed libraries, to create a compiled application that can be distributed & executed as is on other computers.
iPython took the renowned programming language Python and wrapped an interactive shell around it – so it would compile & execute sections of code in sections. iPython came with a command-line shell, and a game-changing IDE: a web-based interface.
iPython's main goal is not application development, but data analysis, exploration & modelling.
Jupyter Notebooks are a language-agnostic IDE for iPython, and also bring a wealth of visual & user-centric improvements to the tool. These developments, primarily open-source and developer-community oriented, are the building blocks of the Noteable service.
A Docker container image is a lightweight, standalone, executable package of software that includes everything needed to run an application: code, runtime, system tools, system libraries and settings.
The important part for us is 'includes everything needed to run an application'.
The problem with a Notebook App is that is runs on the user’s computer, and needs the user to have all the libraries installed that they want to use in their notebook documents.
If we can put the Notebook App plus all the desired libraries into a docker container, we have a distributable service that we know is complete & correct.
Noteable is, at this level, two things:
- A mechanism to provide authenticated access to a range of different Docker App containers
- It uses a Jupyterhub that can launch notebook apps into a private, secure cloud
- Noteable provides the tools and support, for lecturers, students and researchers, whatever their level of skill or knowledge, to deliver narratively rich, coded solutions.
- Noteable enables computational narratives to be readily created, shared and reused within and across teaching and learning contexts.
- In order for data, and the computations that process and visualize that data to be useful and meaningful for humans, they must be embedded into a narrative - a computational narrative - that tells a story for a particular audience and context.
- Our tools are designed by lecturers and researchers to support lecturers and researchers.
- They are easily integrated into your existing Virtual Learning Environment solutions.
- Tailorable to your teaching: Notebooks can be discipline specific or designed to be bespoke for your needs.
- We can support researchers working with data as well: To provide more CPU or more data storage, niche language kernel support and Big Data tooling.
- Your student numbers may change but our infrastructure makes sure your Notebooks still work smoothly. All without recourse to local IT support.
We have a Trial Access system for potential customers.
When setting up Trial Access, you will be limited to the number of concurrent users (normally 10). Authentication is via organisation email address, and runs for an agreed time (normally a month).
Note: Trial access is via a your VLE/LMS, allowing you to control, and test, roles and privilages. Trial accounts are not carried over to a main subscription.
There is a technology called Learning Tool Interoperability which allows an organization’s Virtual Learning Environment to connect an authenticated user to Noteable.
This process is handled by the admin team for your VLE/LMS, and only needs to be done once
We will first set up a connection to the noteable-beta site, to confirm you can create the connection you want, and to allow your service-team to preview updates.
For an LTI connection, you will be setting up and
External Tool or
basic LTI Tool. We will sent you three pieces of information: a
secret, and the
Launch url... and you plug these into the appropriate fields in your configuration form. You need to open in a new window [or tab] - and not stay in an iframe.
We look for four pieces of information:
- context id (the course code)
- context title (the course name)
- role ("Instructor" or anything else)
We do not look for real names, email addresses or any other information.
We would prefer a username such as
35f17232b17b6a4d0025c64b53658088a1545860, and a sensible course code (perhaps
MATH101_2020_SEM1) rather than
86fde15399c4156c8d0aee664b625d3de2920784 - but Noteable will work with the obfuscated codes.
Once the noteable-beta connection is working correctly, we will create a new
Launch url to enable access to the main noteable service.
As a tutor/instructor - for classes
Your local VLE/LMS team are best placed to help with this, but essentially you will be adding an
External Tool or
Basic LTI Tool item to the set of modules & items in the course-content.
This assumes the libraries listed in the synopsis descriptions is not enough
Maintaining a complete & comprehensive table of libraries across all notebooks proved to be an enormous, and unwieldy, table - so, no, that list is not available outside the service.
If you start the relevant notebook, you can get the list yourself:
!conda listin a notebook cell, or
conda listin a terminal
installed.packages() will list R libraries.
For most notebooks
In an early cell in your notebook, install the package - use either of these options:
!conda install -y package-name
!pip install package-name
conda is much slower, but checks version dependencies to ensure there are no problems.
pip will just install the library.
In either case - the library will not be present when you next start a notebook server.
You can install Python packages as above (and many r-libraries are available as conda or pip libraries).
For libraries from the R repository, we have found the solution that works is to use the
R -e 'install.packages("testthat", repo="http://cran.rstudio.com/")'will install the
R -e 'install.packages(c("testthat", "alr3", "funkyPigeon"), repo="http://cran.rstudio.com/")'will install all three libraries
Packages are installed under
$HOME/R/ and will persist between sessions
From your notebook, you can’t.
Noteable notebooks have an extension called “
nbgitpuller” (available under the “
+GitRepo” button in the Notebook Dashboard.) If you make files available from an accessible git repo (does not have to be GitHub), then others may download those files. For full details on using this method, please read the nbgitpuller documentation. IMPORTANT: You do NOT need to create fancy links or anything...
+GitRepo does that for you.
Most (but not all) Noteable notebooks have an extension called “
nbgrader”. This allows instructors to make assignments available for courses. Nbgrader has the advantage that it supports grading and limits distribution to just those on a specific course. The downside is that nbgrader requires a connecton from an LMS/VLE (see the nbgrader section)
Noteable has different Notebooks available to the user.
The majority of notebooks have
Python 3 with a number of additional libraries pre-installed.
Specialist notebooks provide specialist kernels: specifically
Specialist notebooks provide different Python libraries:
R with Stan, R in the
RStudio interface, ....
Short answer: no
Long answer: you can sort of fudge it.
nbgrader solution is to have a shared notebook-server, which is not an available solution within Noteable.
The way to fudge it is to slice the problem into smaller segments:
- Vertical slicing: In this scheme, each tutor marks all questions for a subset of the class. Ensure your tutors are identified as
Instructorswhen they access Noteable (ie, they get the
formgradertab). You divide your student cohort across the tutors, and each tutor generates & releases their own assignment [assumed to be the same
.ipynbfile, suitably named to distinguish it from the other tutors]. Students then only fetch the assignment for their group, and the process is effectively managed. Results will need to me manually amalgamated.
- Horizontal slicing: This simply changes the marking process from all questions for a smaller group to all the students for a smaller assessment. As before, ensure your tutors are identified as Instructors - then each tutor releases a different notebook [just containing the code for their questions.] The downside to this solution is that questions need to be completely self-contained - and that's hard to do.